Selected Student Publications


Balewski ZZ, Elston TW, Knudsen EB, Wallis JD. Value dynamics affect choice preparation during decision-making. Nat Neurosci. 2023 Sep;26(9):1575-1583. doi: 10.1038/s41593-023-01407-3. Epub 2023 Aug 10. PMID: 37563295; PMCID: PMC10576429.

Bounds HA, Sadahiro M, Hendricks WD, Gajowa M, Gopakumar K, Quintana D, Tasic B, Daigle TL, Zeng H, Oldenburg IA, Adesnik H. All-optical recreation of naturalistic neural activity with a multifunctional transgenic reporter mouse. Cell Rep. 2023 Aug 29;42(8):112909. doi: 10.1016/j.celrep.2023.112909. Epub 2023 Aug 4. PMID: 37542722; PMCID: PMC10755854.

Cording KR, Bateup HS. Altered motor learning and coordination in mouse models of autism spectrum disorder. Front Cell Neurosci. 2023 Nov 8;17:1270489. doi: 10.3389/fncel.2023.1270489. PMID: 38026686; PMCID: PMC10663323.

Deniz F, Tseng C, Wehbe L, Dupré la Tour T, Gallant JL. Semantic Representations during Language Comprehension Are Affected by Context. J Neurosci. 2023 Apr 26;43(17):3144-3158. doi: 10.1523/JNEUROSCI.2459-21.2023. Epub 2023 Mar 27. PMID: 36973013; PMCID: PMC10146529.

Gong XL, Huth AG, Deniz F, Johnson K, Gallant JL, Theunissen FE. Phonemic segmentation of narrative speech in human cerebral cortex. Nat Commun. 2023 Jul 18;14(1):4309. doi: 10.1038/s41467-023-39872-w.

Hoy CW, Quiroga-Martinez DR, Sandoval E, King-Stephens D, Laxer KD, Weber P, Lin JJ, Knight RT. Asymmetric coding of reward prediction errors in human insula and dorsomedial prefrontal cortex. Nat Commun. 2023 Dec 21;14(1):8520. doi: 10.1038/s41467-023-44248-1. PMID: 38129440; PMCID: PMC10739882.

LeBel A, Wagner L, Jain S, Adhikari-Desai A, Gupta B, Morgenthal A, Tang J, Xu L, Huth AG. A natural language fMRI dataset for voxelwise encoding models. Sci Data. 2023 Aug 23;10(1):555. doi: 10.1038/s41597-023-02437-z. PMID: 37612332; PMCID: PMC10447563.

Liu C, Freeman DJ, Lammel S. Head-mounted central venous access during optical recordings and manipulations of neural activity in mice. Nat Protoc. 2023 Dec 6. doi: 10.1038/s41596-023-00928-2. Epub ahead of print. PMID: 38057625.

Meschke EX, Castello MVDO, la Tour TD, Gallant JL. Model connectivity: leveraging the power of encoding models to overcome the limitations of functional connectivity. bioRxiv [Preprint]. 2023 Jul 19:2023.07.17.549356. doi: 10.1101/2023.07.17.549356. PMID: 37503232; PMCID: PMC10370105.

Parker BJ, Voorhies WI, Jiahui G, Miller JA, Willbrand E, Hallock T, Furl N, Garrido L, Duchaine B, Weiner KS. Hominoid-specific sulcal variability is related to face perception ability. Brain Struct Funct. 2023 Mar;228(2):677-685. doi: 10.1007/s00429-023-02611-4. Epub 2023 Feb 14. PMID: 36786881.

Robotka H, Thomas LYu K, Wood W, Elie JE, Gahr M, Theunissen FE. Sparse ensemble neural code for a complete vocal repertoire. Cell Rep. 2023 Feb 28;42(2):112034. doi: 10.1016/j.celrep.2023.112034. Epub 2023 Jan 24. PMID: 36696266; PMCID: PMC10363576.

Voufo C, Chen AQ, Smith BE, Yan R, Feller MB, Tiriac A. Circuit mechanisms underlying embryonic retinal waves. Elife. 2023 Feb 15;12:e81983. doi: 10.7554/eLife.81983. PMID: 36790167; PMCID: PMC9988258.

Wu S, Hernandez Villegas NC, Schekman R. Chemical disaggregation of alpha-synuclein fibrils as a therapy for synucleinopathies. Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2300965120. doi: 10.1073/pnas.2300965120. Epub 2023 Mar 8. PMID: 36888654; PMCID: PMC10242719.

Yu K, Wood WE, Johnston LG, Theunissen FE. Lesions to Caudomedial Nidopallium Impair Individual Vocal Recognition in the Zebra Finch. J Neurosci. 2023 Apr 5;43(14):2579-2596. doi: 10.1523/JNEUROSCI.0643-22.2023. Epub 2023 Mar 1. PMID: 36859308; PMCID: PMC10082456.

Zippi EL, Shvartsman GF, Vendrell-Llopis N, Wallis JD, Carmena JM. Distinct neural representations during a brain-machine interface and manual reaching task in motor cortex, prefrontal cortex, and striatum. Sci Rep. 2023 Oct 19;13(1):17810. doi: 10.1038/s41598-023-44405-y. PMID: 37857827; PMCID: PMC10587077.


Adams JN, Harrison TM, Maass A, Baker SL, Jagust WJ. Distinct Factors Drive the Spatiotemporal Progression of Tau Pathology in Older Adults. J Neurosci. 2022 Feb 16;42(7):1352-1361. doi: 10.1523/JNEUROSCI.1601-21.2021. Epub 2021 Dec 29. PMID: 34965972; PMCID: PMC8883857.

Balewski ZZ, Knudsen EB, Wallis JD. Fast and slow contributions to decision-making in corticostriatal circuits. Neuron. 2022 Jul 6;110(13):2170-2182.e4. doi: 10.1016/j.neuron.2022.04.005. Epub 2022 May 6. PMID: 35525242; PMCID: PMC9262822.

Caval-Holme FS, Aranda ML, Chen AQ, Tiriac A, Zhang Y, Smith B, Birnbaumer L, Schmidt TM, Feller MB. The Retinal Basis of Light Aversion in Neonatal Mice. J Neurosci. 2022 May 18;42(20):4101-4115. doi: 10.1523/JNEUROSCI.0151-22.2022. Epub 2022 Apr 8. PMID: 35396331; PMCID: PMC9121827.

Gildea HK, Frankino PA, Tronnes SU, Pender CL, Durieux J, Dishart JG, Choi HO, Hunter TD, Cheung SS, Frakes AE, Sukarto E, Wickham K, Dillin A. Glia of C. elegans coordinate a protective organismal heat shock response independent of the neuronal thermosensory circuit. Sci Adv. 2022 Dec 9;8(49):eabq3970. doi: 10.1126/sciadv.abq3970. Epub 2022 Dec 9. PMID: 36490338; PMCID: PMC9733925.

Grant AD, Wilbrecht L, Kriegsfeld LJ. Sex Differences in Pubertal Circadian and Ultradian Rhythmic Development Under Semi-naturalistic Conditions. J Biol Rhythms. 2022 Aug;37(4):442-454. doi: 10.1177/07487304221092715. Epub 2022 May 3. PMID: 35502708; PMCID: PMC9329191.

Kobayashi K, Kable JW, Hsu M, Jenkins AC. Neural representations of others' traits predict social decisions. Proc Natl Acad Sci U S A. 2022 May 31;119(22):e2116944119. doi: 10.1073/pnas.2116944119. Epub 2022 May 23. PMID: 35605117; PMCID: PMC9295729.

LaPoint MR, Baker SL, Landau SM, Harrison TM, Jagust WJ. Rates of β-amyloid deposition indicate widespread simultaneous accumulation throughout the brain. Neurobiol Aging. 2022 Jul;115:1-11. doi: 10.1016/j.neurobiolaging.2022.03.005. Epub 2022 Mar 14. PMID: 35447369; PMCID: PMC9986974.

Li JJ, Xia L, Dong F, Collins AGE. Credit assignment in hierarchical option transfer. Cogsci. 2022 Jul;44:948-954. PMID: 36534042; PMCID: PMC9751259.

Liberti WA 3rd, Schmid TA, Forli A, Snyder M, Yartsev MM. A stable hippocampal code in freely flying bats. Nature. 2022 Apr;604(7904):98-103. doi: 10.1038/s41586-022-04560-0. Epub 2022 Mar 30. PMID: 35355012; PMCID: PMC10212506.

Liu C, Tose AJ, Verharen JPH, Zhu Y, Tang LW, de Jong JW, Du JX, Beier KT, Lammel S. An inhibitory brainstem input to dopamine neurons encodes nicotine aversion. Neuron. 2022 Sep 21;110(18):3018-3035.e7. doi: 10.1016/j.neuron.2022.07.003. Epub 2022 Aug 2. PMID: 35921846; PMCID: PMC9509462.

Miller JA, Tambini A, Kiyonaga A, D'Esposito M. Long-term learning transforms prefrontal cortex representations during working memory. Neuron. 2022 Nov 16;110(22):3805-3819.e6. doi: 10.1016/j.neuron.2022.09.019. Epub 2022 Oct 13. PMID: 36240768; PMCID: PMC9768795.

Mukerji A, Byrne KN, Yang E, Levi DM, Silver MA. Visual cortical γ-aminobutyric acid and perceptual suppression in amblyopia. Front Hum Neurosci. 2022 Sep 2;16:949395. doi: 10.3389/fnhum.2022.949395. PMID: 36118971; PMCID: PMC9479630.

Newton M, Cookson SL, D'Esposito M, Kayser A. Connectivity-Defined Subdivisions of the Intraparietal Sulcus Respond Differentially to Abstraction during Decision Making. J Neurosci. 2022 Aug 29;42(39):7454–65. doi: 10.1523/JNEUROSCI.1237-21.2022. Epub ahead of print. PMID: 36041850; PMCID: PMC9525172.

Toker D, Pappas I, Lendner JD, Frohlich J, Mateos DM, Muthukumaraswamy S, Carhart-Harris R, Paff M, Vespa PM, Monti MM, Sommer FT, Knight RT, D'Esposito M. Consciousness is supported by near-critical slow cortical electrodynamics. Proc Natl Acad Sci U S A. 2022 Feb 15;119(7):e2024455119. doi: 10.1073/pnas.2024455119. PMID: 35145021; PMCID: PMC8851554.

Yao Y, Barger Z, Saffari Doost M, Tso CF, Darmohray D, Silverman D, Liu D, Ma C, Cetin A, Yao S, Zeng H, Dan Y. Cardiovascular baroreflex circuit moonlights in sleep control. Neuron. 2022 Dec 7;110(23):3986-3999.e6. doi: 10.1016/j.neuron.2022.08.027. Epub 2022 Sep 27. PMID: 36170850.

Zippi EL, You AK, Ganguly K, Carmena JM. Selective modulation of cortical population dynamics during neuroprosthetic skill learning. Sci Rep. 2022 Sep 24;12(1):15948. doi: 10.1038/s41598-022-20218-3. PMID: 36153356; PMCID: PMC9509316.


Adams JN, Harrison TM, Maass A, Baker SL, Jagust WJ (2021) Distinct factors drive the spatiotemporal progression of tau pathology in older adults. Journal of Neuroscience, in press

Benthall KN, Cording KR, Agopyan-Miu AHCW, Wong CD, Chen EY, Bateup HS.  Loss of Tsc1 from striatal direct pathway neurons impairs endocannabinoid-LTD and enhances motor routine learning. Cell Rep. 2021 Aug 10;36(6):109511. doi: 10.1016/j.celrep.2021.109511.

Breton JM, Barraza M, Hu KY, Frias SJ, Long KLP, Kaufer D (2021) Juvenile exposure to acute traumatic stress leads to long-lasting alterations in grey matter myelination in adult female but not male rats. Neurobiology of Stress 14:100319

Eichenbaum A, Pappas I, Lurie D, Cohen JR, D’Esposito M (2021) Differential contributions of static and time-varying functional connectivity to human behavior. Network Neuroscience 5:145-165

El-Quessny M, Feller MB (2021) Dendrite morphology minimally influences the synaptic distribution of excitation and inhibition in retinal direction-selective ganglion cells. eNeuro 8(5) ENEURO.0261-21.2021

Frye CG, Simon J, Wadia NS, Ligeralde A, DeWeese MR, Bouchard KE (2021) Critical point-finding methods reveal gradient-flat regions of deep network losses. Neural Computation 33:1469-1497

Gates V, Suchow JW, Griffiths TL (2021) Memory transmission in small groups and large networks: an empirical study. Psychonomic Bulletin & Review, in press

Hoy CW, Steiner SC, Knight RT (2021) Single-trial modeling separates multiple overlapping prediction errors during reward processing in human EEG. Communications Biology 4:910

Llorens A, Tzovara A, Bellier L, Bhaya-Grossman I, Bidet-Caulet A, Chang WK, Cross ZR, Dominguez-Faus R, Flinker A, Fonken Y, Gorenstein MA, Holdgraf C, Hoy CW, Ivanova MV, Jimenez RT, Jun S, Kam JWY, Kidd C, Marcelle E, Marciano D, Martin S, Myers NE, Ojala K, Perry A, Pinheiro-Chagas P, Riès SK, Saez I, Skelin I, Slama K, Staveland B, Bassett DS, Buffalo EA, Fairhall AL, Kopell NJ, Kray LJ, Lin JJ, Nobre AC, Riley D, Solbakk AK, Wallis JD, Wang XJ, Yuval-Greenberg S, Kastner S, Knight RT, Dronkers NF (2021) Gender bias in academia: A lifetime problem that needs solutions. Neuron 109:2047-2074

Miller JA, Voorhies WI, Lurie DJ, D’Esposito M, Weiner KS (2021) Overlooked tertiary sulci serve as a meso-scale link between microstructural and functional properties of human lateral prefrontal cortex. Journal of Neuroscience 41:2229-2244

Popham SF, Huth AG, Bilenko NY, Deniz F, Gao JS, Nunez-Elizalde AO, Gallant JL (2021) Visual and linguistic semantic representations are aligned at the border of human visual cortex. Nature Neuroscience 24:1628-1636

Rose MC, Styr B, Schmid TA, Elie JE, Yartsev MM (2021) Cortical representation of group social communication in bats. Science 374:eaba9584

Ziontz J, Adams JN, Harrison TM, Baker SL, Jagust WJ (2021) Hippocampal connectivity with retrosplenial cortex is linked to neocortical tau accumulation and memory function. Journal of Neuroscience 41:8839-8847


Battleday RM, Peterson JC, Griffiths TL (2020) Capturing human categorization of natural images by combining deep networks and cognitive models. Nature Communications 11:5418

Eichenbaum A, Scimeca JM, D’Esposito M (2020) Dissociable neural systems support the learning and transfer of hierarchical control structure. Journal of Neuroscience 40:6624-6637

El-Quessny M, Maanum K, Feller MB (2020) Visual experience influences dendritic orientation but is not required for asymmetric wiring of the retinal direction selective circuit. Cell Reports 31:107844

Fonken YM, Kam JWY, Knight RT (2020) A differential role for human hippocampus in novelty and contextual processing: Implications for P300. Psychophysiology 57:e13400

Isett BR, Feldman DE (2020) Cortical coding of whisking phase during surface whisking. Current Biology 30:3065-3074

Grant AD, Newman M, Kriegsfeld LJ (2020) Ultradian rhythms in heart rate variability and distal body temperature anticipate onset of the luteinizing hormone surge. Scientific Reports 10:20378

Lorenc ES, Vandenbroucke ARE, Nee DE, de Lange FP, D’Esposito M (2020) Dissociable neural mechanisms underlie currently-relevant, future-relevant, and discarded working memory representations. Scientific Reports 10:11195

Miller JA, Kiyonaga A, Ivry RB, D’Esposito M (2020) Prioritized verbal working memory content biases ongoing action. Journal of Experimental Psychology: Human Perception and Performance, in press

Oldfield CS, Grossrubatscher I, Chávez M, Hoagland A, Huth AR, Carroll EC, Prendergast A, Qu T, Gallant JL, Wyart C, Isacoff EY (2020) Experience, circuit dynamics, and forebrain recruitment in larval zebrafish prey capture. eLife 9:e56619

Thomas AW, Delevich K, Chang I, Wilbrecht L (2020) Variation in early life maternal care predicts later long range frontal cortex synapse development in mice. Developmental Cognitive Neuroscience 41:100737

Yu K, Wood WE, Theunissen FE (2020) High-capacity auditory memory for vocal communication in a social songbird. Science Advances 6:eabe0440


Adams JN, Maass A, Harrison TM, Baker SL, Jagust WJ (2019) Cortical tau deposition follows patterns of entorhinal functional connectivity in aging. eLife 8:e49132

Barger Z, Frye CG, Liu D, Dan Y, Bouchard KE (2019) Robust, automated sleep scoring by a compact neural network with distributional shift correction. PLoS ONE 14:e0224642

Breton JM, Charbit AR, Snyder BJ, Fong PTK, Dias EV, Himmels P, Lock H, Margolis EB (2019) Relative contributions and mapping of ventral tegmental area dopamine and GABA neurons by projection target in the rat. Journal of Comparative Neurology 526:916-941

Caval-Holme F, Zhang Y, Feller MB (2019) Gap junction coupling shapes the encoding of light in the developing retina. Current Biology 29:4024-4035

Cerniauskas I, Winterer J, …, Lammel S (2019) Chronic stress induces activity, synaptic, and transcriptional remodeling of the lateral habenula associated with deficits in motivated behaviors. Neuron 104:899-915

Kobayashi K, Hsu M (2019) Common neural code for reward and information value. Proceedings of the National Academy of Sciences USA 26:13061-13066

Laboy-Juárez KJ, Langberg T, Ahn S, Feldman DE (2019) Elementary motion sequence detectors in whisker somatosensory cortex. Nature Neuroscience 22:1438-1449

LeMessurier AM, Laboy-Juárez KJ, McClain K, Chen S, Nguyen T, Feldman DE (2019) Enrichment drives emergence of functional columns and improves sensory coding in the whisker map in L2/3 of mouse S1. eLife 8:e46321

Lieder F, Chen OX, Krueger PM, Griffiths TL (2019) Cognitive prostheses for goal achievement. Nature Human Behavior 3:1096-1106

Nunez-Elizalde AO, Huth AG, Gallant JL (2019) Voxelwise encoding models with non-spherical multivariate normal priors. Neuroimage 197:482-492

Naka A, Veit J, Shababo B, …, Ngai J, Adesnik H (2019) Complementary networks of cortical somatostatin interneurons enforce layer specific control. eLife 8:e43696

Senatorov VV Jr., Friedman AR, …, Kaufer D (2019) Blood-brain barrier dysfunction in aging induces hyperactivation of TGF-beta signaling and chronic yet reversible dysfunction. Science Translational Medicine 11:521

Toker D, Sommer FT (2019) Information integration in large brain networks. PLoS Computational Biology 15:e1006807


Isett BR, Feasel SH, Lane MA, Feldman DE (2018) Slip-based coding of local shape and texture in mouse S1. Neuron 97:418-33.

Day TP, Byrne LC, Flannery JG, Schaffer DV (2018) Screening for neutralizing antibodies against natural and engineered AAV capsids in nonhuman primate retinas. Methods Mol Biol 1715:239-49.

Gaub BM, Berry MH, Visel M, Holt A, Isacoff EY, Flannery JG. (2018) Optogenetic Retinal Gene Therapy with the Light Gated GPCR Vertebrate Rhodopsin. Methods Mol Biol. 1715:177-189.

Adams JN, Lockhart SN, Li L, Jagust WJ. (2018) Relationships between tau and glucose metabolism reflect Alzheimer’s disease pathology in cognitively normal older adults. Cereb Cortex, in press.

Neely RM, Koralek AC, Athalye VR, Costa RM, Carmena JM. (2018) Volitional modulation of primary visual cortex activity requires the basal ganglia. Neuron 97:1356-1368.

Liberman A, Manassi M, Whitney D. (2018) Serial dependence promotes the stability of perceived emotional expression depending on face similarity. Atten Percept Psychophys 80:1461-1473.

Lieder F, Shenhav A, Musslick S, Griffiths TL. (2018) Rational metareasoning and the plasticity of cognitive control. PLoS Comput Biol 14:e1006043.

Lorenc ES, Sreenivasan KK, Nee DE, Vandenbroucke ARE, D’Esposito M. (2018) Flexible coding of visual working memory representations during distraction. J Neurosci 38:5267-5276.

Haller M, Case J, Crone NE, Chang EF, King-Stephens D, Laxer KD, Weber PB, Parvizi J, Knight RT, Shestyuk AY. (2018) Persistent neuronal activity in human prefrontal cortex links perception and action. Nat Hum Behav 2:80-91


Bliss DP, D’Esposito M. (2017) Synaptic augmentation in a cortical circuit model reproduces serial dependence in visual working memory. PLoS One. 12(12):e0188927.

Goldstein-Piekarski AN, Greer SM, Saletin JM, Harvey AG, Williams LM, Walker MP. (2017) Sex, Sleep Deprivation, and the Anxious Brain. J Cogn Neurosci.Dec 15:1-14.

Gadye L, Das D, Sanchez MA, Street K, Baudhuin A, Wagner A, Cole MB, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J, Fletcher RB. (2017) Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities. Cell Stem Cell. pii: S1934-5909(17)30452-6.

Bliss DP, Sun JJ, D’Esposito M. (2017) Serial dependence is absent at the time of perception but increases in visual working memory. Sci Rep. 7(1):14739.

Holdgraf CR, Rieger JW, Micheli C, Martin S, Knight RT, Theunissen FE. (2017) Encoding and Decoding Models in Cognitive Electrophysiology. Front Syst Neurosci. Sep 26;11:61

Moorman HG, Gowda S, Carmena JM. (2017) Control of Redundant Kinematic Degrees of Freedom in a Closed-Loop Brain-Machine Interface. IEEE Trans Neural Syst Rehabil Eng. 25(6):750-760.

Gratton C, Yousef S, Aarts E, Wallace DL, D’Esposito M, Silver MA. (2017) Cholinergic, But Not Dopaminergic or Noradrenergic, Enhancement Sharpens Visual Spatial Perception in Humans. J Neurosci. 37(16):4405-4415.

Kim H, Kirkhart C, Scott K. Long-range projection neurons in the taste circuit of Drosophila. Elife. 2017 6. pii: e23386.

Pluta SR, Lyall EH, Telian GI, Ryapolova-Webb E, Adesnik H. (2017) Surround Integration Organizes a Spatial Map during Active Sensation. Neuron. 94(6):1220-1233.e5.

Kobayashi K, Hsu M. (2017) Neural mechanisms of updating under reducible and irreducible uncertainty. J Neurosci. Jun 16. pii: 0535-17.

Marks SM, Lockhart SN, Baker SL, Jagust WJ. (2017) Tau and β-Amyloid Are Associated with Medial Temporal Lobe Structure, Function, and Memory Encoding in  Normal Aging. J Neurosci. 37(12):3192-3201.

Slama SJK, Helfrich RF. (2017) How Does Expectation Shape Object-Based Attentional  Selection? J Neurosci. 37(17):4427-4429.

de Heer WA, Huth AG, Griffiths TL, Gallant JL, Theunissen FE. (2017) The hierarchical cortical organization of human speech processing. J Neurosci. Jun 6. pii: 3267-16.


Seo D, Neely RM, Shen K, Singhal U, Alon E, Rabaey JM, Carmena JM, Maharbiz MM.  (2016) Wireless Recording in the Peripheral Nervous System with Ultrasonic Neural Dust. Neuron 91(3):529-39.

McGuire LM, Telian G, Laboy-Juárez KJ, Miyashita T, Lee DJ, Smith KA, Feldman DE. (2016) Short Time-Scale Sensory Coding in S1 during Discrimination of Whisker Vibrotactile Sequences. PLoS Biol. 14(8):e1002549.

Holdgraf CR, de Heer W, Pasley B, Rieger J, Crone N, Lin JJ, Knight RT, Theunissen FE. (2016) Rapid tuning shifts in human auditory cortex enhance speech intelligibility. Nat Commun. 7: 13654.

Langberg T. (2016) Thalamic Bursts and Single Spikes Evoke Distinct Inhibitory States in the Primary Sensory Cortex. J Neurosci. 36(45): 11496-11497.

Huth AG, de Heer WA, Griffiths TL, Theunissen FE, Gallant JL. (2016) Natural speech reveals the semantic maps that tile human cerebral cortex.  Nature.  532: 453-8.

Vlasits AL, Morrie RD, Tran-Van-Minh A, Bleckert A, Gainer CF, DiGregorio DA, Feller MB. (2016) A Role for Synaptic Input Distribution in a Dendritic Computation of Motion Direction in the Retina.  Neuron. 89: 1317-30.

Greer SM, Goldstein AN, Knutson B, Walker MP. (2016) A Genetic Polymorphism of the Human Dopamine Transporter Determines the Impact of Sleep Deprivation on Brain Responses to Rewards and Punishments.  J Cogn Neurosci. 28: 803-10. doi: 10.1162/jocn_a_00939.

Hillenbrand SF, Ivry RB, Schlerf JE. (2016)  Impact of task-related changes in heart rate on estimation of hemodynamic response and model fit.  Neuroimage. 132: 455-68.

Cox J, Pinto L, Dan Y. (2016)  Calcium imaging of sleep-wake related neuronal activity in the dorsal pons. Nat Commun. 7: 10763.

Merel J, Shababo B, Naka A, Adesnik H, Paninski L. (2016) Bayesian methods for event analysis of intracellular currents.  J Neurosci Methods. 269: 21-32.

Fonken YM, Rieger JW, Tzvi E, Crone NE, Chang E, Parvizi J, Knight RT, Krämer UM (2016)  Frontal and motor cortex contributions to response inhibition: evidence from electrocorticography. J Neurophysiol. 115: 2224-36.

Muroy SE, Long KL, Kaufer D, Kirby ED. (2016)  Moderate Stress-Induced Social Bonding and Oxytocin Signaling are Disrupted by Predator Odor in Male Rats.  Neuropsychopharmacology. 41: 2160-70.

Thomas AW, Caporale N, Wu C, Wilbrecht L. (2016) Early maternal separation impacts cognitive flexibility at the age of first independence in mice.  Dev Cogn Neurosci. 18: 49-56.

Cano ME, Knight RT. (2016)  Behavioral and EEG Evidence for Auditory Memory Suppression. Front Hum Neurosci. 10: 133.

Gallen CL, Turner GR, Adnan A, D’Esposito M. (2016) Reconfiguration of brain network architecture to support executive control in aging.  Neurobiol Aging. 44: 42-52.


Kallman BR, Kim H, Scott K. (2015)  Excitation and inhibition onto central courtship neurons biases Drosophila mate choice.  Elife. 4: e11188.

Voytek B, Kayser AS, Badre D, Fegen D, Chang EF, Crone NE, Parvizi J, Knight RT, D’Esposito M. (2015) Oscillatory dynamics coordinating human frontal networks in support of goal maintenance. Nat Neurosci. 18: 1318-24. doi: 10.1038/nn.4071.

Pinto L, Dan Y. (2015) Cell-Type-Specific Activity in Prefrontal Cortex during Goal-Directed Behavior. Neuron. 87(2): 437-50.

Fegen D, Buchsbaum BR, D’Esposito M. (2015) The effect of rehearsal rate and memory load on verbal working memory. Neuroimage. 105: 120-31.

Gaub BM, Berry MH, Holt AE, Isacoff EY, Flannery JG (2015) Optogenetic Vision Restoration Using Rhodopsin for Enhanced Sensitivity.  Mol Therapy. 23: 1562-71.

Pluta S, Naka A, Veit J, Telian G, Yao L, Hakim R, Taylor D, Adesnik H. (2015)  A direct translaminar inhibitory circuit tunes cortical output.  Nat Neurosci. 18: 1631-40.

Arnemann KL, Chen AJ, Novakovic-Agopian T, Gratton C, Nomura EM, D’Esposito M. (2015)  Functional brain network modularity predicts response to cognitive training after brain injury.  Neurology 84: 1568-74.

Mander BA, Marks SM, Vogel JW, Rao V, Lu B, Saletin JM, Ancoli-Israel S, Jagust WJ, Walker MP. (2015)  β-amyloid disrupts human NREM slow waves and related hippocampus-dependent memory consolidation.  Nat Neurosci. 18: 1051-7.

Flinker A, Korzeniewska A, Shestyuk AY, Franaszczuk PJ, Dronkers NF, Knight RT, Crone NE. (2015) Redefining the role of Broca’s area in speech.  Proc Natl Acad Sci U S A. 112: 2871-5.

Gao JS, Huth AG, Lescroart MD, Gallant JL. (2015)  Pycortex: an interactive surface visualizer for fMRI.  Front Neuroinform. 9: 23. doi: 10.3389/fninf.2015.00023.

Mackey AP, Miller Singley AT, Wendelken C, Bunge SA. (2015)  Characterizing Behavioral and Brain Changes Associated with Practicing Reasoning Skills.  PLoS One. 10(9):e0137627.

Naka A.  (2015) Cell-Type-Specific Manipulation Reveals New Specificity in the Neocortical Microcircuit.  J Neurosci. 35: 8976-8.

Byrne LC, Lin YJ, Lee T, Schaffer DV, Flannery JG. (2015) The expression pattern of systemically injected AAV9 in the developing mouse retina is determined by age. Mol Ther. 23(2):290-6.

Kirkhart C, Scott K. (2015) Gustatory learning and processing in the Drosophila mushroom bodies. J Neurosci. 2015 35: 5950-8.

Forster S, Nunez Elizalde AO, Castle E, Bishop SJ. (2015) Unraveling the anxious mind: anxiety, worry, and frontal engagement in sustained attention versus off-task processing. Cereb Cortex. 25: 609-18.

Griffiths TL, Lieder F, Goodman ND. (2015) Rational use of cognitive resources: levels of analysis between the computational and the algorithmic. Topics in Cognitive Science 7: 217-29.

Goldstein-Piekarski AN, Greer SM, Saletin JM, Walker MP (2015)  Sleep Deprivation Impairs the Human Central and Peripheral Nervous System Discrimination of Social Threat.  J Neurosci. 35: 10135-45.


Lara AH, Wallis JD. (2014) Executive control processes underlying multi-item working memory. Nat Neurosci. 17: 876-83.

Agarwal G, Stevenson IH, Berényi A, Mizuseki K, Buzsáki G, Sommer FT. (2014) Spatially distributed local fields in the hippocampus encode rat position. Science 344: 626-30.

Liberman A, Fischer J, Whitney D. (2014) Serial dependence in the perception of faces. Curr Biol. 24: 2569-74.

Gaub BM, Berry MH, Holt AE, Reiner A, Kienzler MA, Dolgova N, Nikonov S, Aguirre GD, Beltran WA, Flannery JG, Isacoff EY. (2014) Restoration of visual function by expression of a light-gated mammalian ion channel in retinal ganglion cells or ON-bipolar cells. Proc Natl Acad Sci U S A. 111: E5574-83.

Pool AH, Kvello P, Mann K, Cheung SK, Gordon MD, Wang L, Scott K (2014). Four GABAergic interneurons impose feeding restraint in Drosophila. Neuron 83: 164-77.

Rodgers CC, DeWeese MR (2014) Neural correlates of task switching in prefrontal cortex and primary auditory cortex in a novel stimulus selection task for rodents. Neuron 82: 1157-70.

Vlasits AL, Bos R, Morrie RD, Fortuny C, Flannery JG, Feller MB, Rivlin-Etzion M. (2014) Visual Stimulation Switches the Polarity of Excitatory Input to Starburst Amacrine Cells. Neuron. 83: 1172-84.

Clancy KB, Koralek AC, Costa RM, Feldman DE, Carmena JM (2014) Volitional modulation of optically recorded calcium signals during neuroprosthetic learning.  Nat Neurosci. 17: 807-9.

Chetty S, Friedman AR, Taravosh-Lahn K, Kirby ED, Mirescu C, Guo F, Krupik D, Nicholas A, Geraghty AC, Krishnamurthy A, Tsai MK, Covarrubias D, Wong AT, Francis DD, Sapolsky RM, Palmer TD, Pleasure D, Kaufer D (2014) Stress and glucocorticoids promote oligodendrogenesis in the adult hippocampus. Mol Psychiatry. 19: 1275-83.

Day TP, Byrne LC, Schaffer DV, Flannery JG (2014) Advances in AAV vector development for gene therapy in the retina. Adv Exp Med Biol. 801: 687-93.

Blumenfeld RS, Bliss DP, Perez F, D’Esposito M (2014) CoCoTools: open-source software for building connectomes using the CoCoMac anatomical database. J Cogn Neurosci. 26: 722-45.

Orsborn AL, Moorman HG, Overduin SA, Shanechi MM, Dimitrov DF, Carmena JM (2014) Closed-loop decoder adaptation shapes neural plasticity for skillful neuroprosthetic control. Neuron 82: 1380-93.

Denison RN, Vu AT, Yacoub E, Feinberg DA, Silver MA (2014) Functional mapping of the magnocellular and parvocellular subdivisions of human LGN. Neuroimage 102P2:358-369.

Goldstein AN, Walker MP. (2014) The role of sleep in emotional brain function. Annu Rev Clin Psychol. 10: 679-708.

Sreenivasan KK, Gratton C, Vytlacil J, D’Esposito M (2014) Evidence for working memory storage operations in perceptual cortex. Cogn Affect Behav Neurosci. 14: 117-28.

Byrne LC, Oztürk BE, Lee T, Fortuny C, Visel M, Dalkara D, Schaffer DV, Flannery JG (2014) Retinoschisin gene therapy in photoreceptors, Müller glia or all retinal cells in the Rs1h-/- mouse. Gene Therapy 21: 585-92.

Whitaker KJ, Kang X, Herron TJ, Woods DL, Robertson LC, Alvarez BD (2014) White matter microstructure throughout the brain correlates with visual imagery in grapheme-color synesthesia. Neuroimage 90:52-9.


Pinto L, Goard MJ, Estandian D, Xu M, Kwan AC, Lee SH, Harrison TC, Feng G, Dan Y. (2013) Fast modulation of visual perception by basal forebrain cholinergic neurons. Nat Neurosci. 16: 1857-63.

Hamilton LS, Sohl-Dickstein J, Huth AG, Carels VM, Deisseroth K, Bao S. (2013) Optogenetic activation of an inhibitory network enhances feedforward functional connectivity in auditory cortex. Neuron 80: 1066-76.

Moore RC, Lee T, Theunissen FE. (2013) Noise-invariant neurons in the avian auditory cortex: hearing the song in noise. PLoS Comput Biol. 9(3):e1002942.

Çukur T, Huth AG, Nishimoto S, Gallant JL. (2013) Functional subdomains within human FFA. J Neurosci. 33: 16748-66.

Koralek AC, Costa RM, Carmena JM. (2013) Temporally precise cell-specific coherence develops in corticostriatal networks during learning. Neuron 79: 865-72.

Kim H, Gibboni R, Kirkhart C, Bao S. (2013) Impaired critical period plasticity in primary auditory cortex of fragile X model mice. J Neurosci. 33: 15686-92.

Shao YR, Isett BR, Miyashita T, Chung J, Pourzia O, Gasperini RJ, Feldman DE. (2013) Plasticity of recurrent L2/3 inhibition and gamma oscillations by whisker experience. Neuron 80: 210-22.

Kauwe G, Isacoff EY. (2013) Rapid feedback regulation of synaptic efficacy during high-frequency activity at the Drosophila larval neuromuscular junction. Proc Natl Acad Sci U S A. 110: 9142-7.

Voytek B, D’Esposito M, Crone N, Knight RT. (2013) A method for event-related phase/amplitude coupling. Neuroimage. 64: 416-24.

Long JD 2nd, Carmena JM. (2013) Dynamic changes of rodent somatosensory barrel cortex are correlated with learning a novel conditioned stimulus. J Neurophysiol. 109: 2585-95.

Mann K, Gordon MD, Scott K. (2013) A Pair of Interneurons Influences the Choice between Feeding and Locomotion in Drosophila. Neuron. 79: 754-65.

Kirby ED, Muroy SE, Sun WG, Covarrubias D, Leong MJ, Barchas LA, Kaufer D. Acute stress enhances adult rat hippocampal neurogenesis and activation of newborn neurons via secreted astrocytic FGF2. Elife. 2:e00362.

Greer SM, Goldstein AN, Walker MP. (2013) The impact of sleep deprivation on food desire in the human brain. Nat Commun. 4:2259.

Goldstein AN, Greer SM, Saletin JM, Harvey AG, Nitschke JB, Walker MP. (2013) Tired and apprehensive: anxiety amplifies the impact of sleep loss on aversive brain anticipation. J Neurosci. 33: 10607-15.

Dalkara D, Byrne LC, Klimczak RR, Visel M, Yin L, Merigan WH, Flannery JG, Schaffer DV. (2013) In vivo-directed evolution of a new adeno-associated virus for therapeutic outer retinal gene delivery from the vitreous. Sci Transl Med. 5: 189ra76.

Köver H, Gill K, Tseng YT, Bao S. (2013) Perceptual and neuronal boundary learned from higher-order stimulus probabilities. J Neurosci. 33: 3699-705.

Mackey AP, Miller Singley AT, Bunge SA. (2013) Intensive reasoning training alters patterns of brain connectivity at rest. J Neurosci. 33: 4796-803.

Gratton C, Sreenivasan KK, Silver MA, D’Esposito M. (2013) Attention selectively modifies the representation of individual faces in the human brain. J Neurosci. 33: 6979-89.

Denison RN, Driver J, Ruff CC. (2013) Temporal structure and complexity affect audio-visual correspondence detection. Front Psychol. 3: 619.

Li L, Gratton C, Fabiani M, Knight RT. (2013) Age-related frontoparietal changes during the control of bottom-up and top-down attention: an ERP study. Neurobiol Aging. 34: 477-88.

Moore RC, Lee T, Theunissen FE. (2013) Noise-invariant neurons in the avian auditory cortex: hearing the song in noise. PLoS Comput Biol. 2013;9(3):e1002942.

Amin N, Gastpar M, Theunissen FE. (2013) Selective and efficient neural coding of communication signals depends on early acoustic and social environment. PLoS One. 2013 8(4):e61417.

Miyakawa A, Gibboni R, Bao S. (2013) Repeated exposure to a tone transiently alters spectral tuning bandwidth of neurons in the central nucleus of inferior colliculus in juvenile rats. Neuroscience 230: 114-20.

2012 and earlier 

Published in 2012

Huth AG, Nishimoto S, Vu AT, Gallant JL. (2012) A continuous semantic space describes the representation of thousands of object and action categories across the human brain. Neuron. 76: 1210-24.

Mackey AP, Whitaker KJ, Bunge SA. (2012) Experience-dependent plasticity in white matter microstructure: reasoning training alters structural connectivity. Front Neuroanat. 6: 32.

Kirby ED, Friedman AR, Covarrubias D, Ying C, Sun WG, Goosens KA, Sapolsky RM, Kaufer D. (2012) Basolateral amygdala regulation of adult hippocampal neurogenesis and fear-related activation of newborn neurons. Mol Psychiatry. 17: 527-36.

Voytek B, D’Esposito M, Crone N, Knight RT. (2013) A method for event-related phase/amplitude coupling. Neuroimage. 64: 416-24.

Dang LC, O’Neil JP, Jagust WJ. (2012) Dopamine supports coupling of attention-related networks. J Neurosci. 32: 9582-7.

Cadieu CF, Olshausen BA. (2012) Learning intermediate-level representations of form and motion from natural movies. Neural Comput. 24: 827-66.

Warp E, Agarwal G, Wyart C, Friedmann D, Oldfield CS, Conner A, Del Bene F, Arrenberg AB, Baier H, Isacoff EY. (2012) Emergence of patterned activity in the developing zebrafish spinal cord. Curr Biol. 22: 93-102.

Mormino EC, Brandel MG, Madison CM, Marks S, Baker SL, Jagust WJ. (2012) Aβ Deposition in aging is associated with increases in brain activation during successful memory encoding. Cereb Cortex. 22: 1813-23.

Gratton C*, Nomura EM*, Perez F, D’Esposito M. (2012) Focal brain lesions disrupt modular organization throughout the brain. Journal of Cognitive Neuroscience, 24, 1275-1285 (*Equal contribution)

Koralek AC, Jin X, Long JD, Costa RM, Carmena JM. (2012) Corticostriatal plasticity is necessary for learning intentional neuroprosthetic skills. Nature, 483: 331-335.

Denison RN, Silver MA. (2012) Distinct contributions of the magnocellular and parvocellular visual streams to perceptual selection. Journal of Cognitive Neuroscience. 24: 246-59.

Held RT, Cooper EA, Banks MS. (2012) Blur and Disparity are Complementary Cues to Depth. Current Biology, 22: 426-31.

Marella S, Mann K, Scott K. (2012) Dopaminergic modulation of sucrose acceptance behavior in Drosophila. Neuron. 2012 73: 941-50.

Published in 2011

Kirby, E.D., Friedman, A.R., Covarrubias, D., Ying, C., Grant, W.G., Goosens, K.A., Sapolsky, R.M., & Kaufer, D. (2011). Basolateral amygdala regulation of adult hippocampal neurogenesis and fear-related activation of newborn neurons. Molecular Psychiatry, In Press.

Perrotin A, Mormino EC, Madison CM, Hayenga AO, Jagust WJ. Subjective cognition and amyloid deposition imaging. A PiB PET study in normal elderly individuals. Arch Neurol. In Press.

Mormino EC, Smiljic A, Hayenga AO, Onami S, Greicius MD, Rabinovici GD, Janabi M, Baker SL, Yen I, Madison CM, Miller BL, Jagust WJ. Relationships between beta-amyloid and functional connectivity in different components of the default mode network in aging. Cerebral Cortex. In Press.

Rosenbloom MH, Alkalay A, Agerwal N, Baker SL, O’Neill JP, Janabi M, Yen IV, Growdon M, Jung J, Madison C, Mormino EC, Rosen HJ, Gorno-Tempini ML, Miller BL, Jagust WJ, Rabinovici GD. Distinct clinical and metabolic deficits in posterior cortical atrophy and Alzheimer’s disease are not related to amyloid distribution. Neurology. In Press.

Oh H, Mormino EC, Madison C, Hayenga A, Smiljic A, Jagust WJ. β-amyloid affects frontal and posterior brain networks in normal aging. 2011. Neuroimage. 54, 1887-95.

Emily Jacobs and Mark D’Esposito, Estrogen Shapes Dopamine-Dependent Cognitive Processes: Implications for Women’s Health, The Journal of Neuroscience, April 6, 2011 • 31(14):5286 –5293

E.A. Cooper, U. Hasson, and S.L. Small. Interpretation-Mediated Changes in Neural Activity During Language Comprehension. NeuroImage, 55(3), 1314-1323, 2011.

E.A. Cooper, J. Burge, and M.S. Banks. The Vertical Horopter is not Adaptable, but It may be Adaptive. Journal of Vision, 11(3):20, 1-19, 2011.

Flinker, A., Chang, E.F., Barbaro, N.M., Berger, M.S., Knight, R.T. (2011) Sub-centimeter language organization in the human temporal lobe. Brain and Language 117 pp. 103-109

Published in 2010

Rabinovici GD, Furst AJ, Alkalay A, Racine CA, O’Neil JP, Janabi M, Baker SL, Agarwal N, Karydas A, Bonasera SJ, Mormino EC, Madison CM, Weiner MW, Gorno-Tempini ML, Rosen HJ, Miller BL, Jagust WJ. Increased Metabolic Vulnerability in Early-Onset Alzheimer’s Disease is Not Related to Amyloid Burden. 2010. Brain, 133, 512-28.

Furst AJ and Mormino E. A BOLD move: clinical application of functional magnetic resonance imaging (fMRI) in aging. 2010. Neurology. 74, 1940-1.

Marta E. Soden and Lu Chen. Fragile X Protein FMRP Is Required for Homeostatic Plasticity and Regulation os Synaptic Strength by Retinoic Acid. The Journal of Neuroscience, December 15, 2010, 30(50):16910-16921; doi:10.1523/JNEUROSCI.3660-10.2010

Flinker, A., Chang, F.E., Kirsch, H.E., Barbaro N.M., Crone, N.E., Knight, R.T. (2010) “Single-Trial Speech Suppression of Auditory Cortex Activity in Humans.” Journal of Neuroscience vol. 30 (49) pp. 16643.

Hania Köver, Shaowen Bao. (2010) Cortical plasticity as a mechanism for storing Bayesian priors in sensory perception. PLoS One, Vol 5, Issue 5, e1049

Nomura, E. M., Gratton, C., Visser, R. M., Kayser, A., Perez, F., & D’Esposito, M. (2010). Double dissociation of two cognitive control networks in patients with focal brain lesions. Proceedings of the National Academy of Sciences of the United States of America, 107(26), 12017-12022

Voytek B. & Knight RT (2010). Prefrontal cortex and basal ganglia contributions to visual working memory. Proc Natl Acad Sci USA 107(42), 18167-18172.

Voytek B, Davis M., Yago E, Barceló F, Vogel EK, Knight RT (2010). Dynamic neuroplasticity after human prefrontal cortex damage. Neuron 68(3), 401-408.

Voytek B, Secundo L, Bidet-Caulet A, Scabini D, Stiver S, Gean AD, Manley G, Knight RT. Hemicraniectomy: A New Model for Human Electrophysiology with High Spatio-Temporal Resolution. J. Cogn Neurosci 22(11), 2491-2502.

R. Held, E.A. Cooper, J. O’Brien, and M.S. Banks. Using Blur to Affect Perceived Distance and Size. ACM Transactions on Graphics, 29(2):1-16, 2010

Insanally MN, Albanna BF, Bao S. Pulsed Noise Experience Disrupts Complex Sound Representations.J Neurophysiol. 2010 Mar 3. PMID: 20200123

Mormino EC, Kluth JT, Madison CM, Rabinovici GD, Baker SL, Miller BL, Koeppe RA, Mathis CA, Weiner MW, Jagust WJ. Episodic memory loss is related to hippocampal-mediated beta-amyloid deposition in elderly subjects. Brain, 132:1310-1323, 2009.

John E. Schlerf, Timothy D. Verstynen, Richard B Ivry, and Rebecca M. C. Spencer. Evidence of a novel somatopic map in the human neocerebellum during complex actions. J Neurophysiol, Apr 2010; doi:10.1152/jn.01117.2009

Mathevon, N., Koralek, A., Weldele, M., Glickman, S.E., & Theunissen, F.E. (2010). What the hyena’s laugh tells: sex, age, dominance and individual identity in the giggling call of Crocuta Crocuta. BMC Ecology, 10(1):9. PMID: 20353550

Published in 2009

Bunge, S.A., Mackey, A., & Whitaker, K. Neurodevelopmental changes in cognitive control and fluid reasoning over childhood. The Cognitive Neurosciences III, edited by Michael Gazzaniga.

Ganguly K, Secundo L, Ranade G, Orsborn A, Chang EF, Dimitrov DF, Wallis JD, Barbaro NM, Knight RT, Carmena JM. Cortical representation of ipsilateral arm movements in monkey and man.J Neurosci. 2009 Oct 14;29(41):12948-56.

Wyart C, Del Bene F, Warp E, Scott EK, Trauner D, Baier H, Isacoff EY. 2009. Optogenetic dissection of a behavioural module in the vertebrate spinal cord. Nature. 461, 407-10.

Lu, H., Lim, B., and Poo, M. M. (2009). Cocaine exposure in utero alters synaptic plasticity in the medial prefrontal cortex of postnatal rats. J Neurosci 29, 12664-12674.

Goard M and Dan Y (2009). Basal forebrain activation enhances cortical coding of natural scenes. Nature Neuroscience. Nov; 12(11):1444-9.

Cacheaux LP, Ivens S, David Y, Lakhter AJ, Bar-Klein G, Shapira M, Heinemann U, Friedman A, Kaufer D. Transcriptome profiling reveals TGF-beta signaling involvement in epileptogenesis. J Neurosci. 2009 Jul 15;29(28):8927-35.

Rokem A, Silver MA. A model of encoding and decoding in V1 and MT accounts for motion perception anisotropies in the human visual system. Brain Res. 2009 Nov 24;1299:3-16

David Y, Cacheaux LP, Ivens S, Lapilover E, Heinemann U, Kaufer D, Friedman A. (2009) Astrocytic dysfunction in epileptogenesis: consequence of altered potassium and glutamate homeostasis J. Neuroscience, 29, 10588-99.

Antonio H. Lara, Steven W. Kennerley, and Jonathan D. Wallis. Encoding of Gustatory Working Memory by Orbitofrontal Neurons. J. Neurosci. 2009;29 765-774

Heesoo Kim and Shaowen Bao. Selective Increase in Representations of Sounds Repeated at an Ethological Rate. J. Neurosci. 2009; 29: 5163Ð5169

Beery AK, Routman DM, Zucker I. Same-sex social bond formation in meadow voles: multiple and rapid formation of attachments. Physiology and Behavior 2009 97: 52-57.

Pasley, B.N.*, Allen, E.A.*, & Freeman, R.D. State-dependent variability of neuronal responses to transcranial magnetic stimulation of the visual cortex. Neuron 2009 62: 291-303. (*Equal contributions)

A. Rokem and M. Ahissar. Interactions of cognitive and auditory abilities in congenitally blind individuals. Neuropsychologia 2009 47: 843-848

Venkatraman, S., Elkabany, K., Long, J.D., Yao, Yimin, and Carmena, J.M. A System for Neural Recording and Closed-Loop Intracortical Microstimulation in Awake Rodents. IEEE Transactions on Biomedical Engineering 2009 56: 15-22.

Huberman A*, Wei W*, Elstrott J*, Stafford B, Feller MB, Barres B. Genetic identification of On-Off direction selective retinal ganglion cells reveals a layer specific subcortical map of posterior motion. Neuron 2009 62: 327-334. (* = equal contribution)

Kirby, E.D., Geraghty, A.G., Ubuka, T., Bentley, G.E., & Kaufer, D. Stress increases putative gonadotropin inhibitory hormone and decreases luteinizing hormone in male rats. Proc Natl Acad Sci. 2009, 106, 11324-9.

Michele N. Insanally, Hania Köver, Heesoo Kim, and Shaowen Bao. Feature-Dependent Sensitive Periods in the Development of Complex Sound Representation. J. Neurosci. 2009 29: 6567-6562.

C. Cadieu and B. Olshausen. Learning transformational invariants from natural movies. In D. Koller, D. Schuurmans, Y. Bengio, and L. Bottou, Eds., Advances in Neural Information Processing Systems 21, pages 209-216. MIT Press, 2009.

Luk, C.-H., Wallis, J. D. Dynamic encoding of responses and outcomes by neurons in medial prefrontal cortex. J. Neurosci. 2009 29: 7526-7539.

Published in 2008

Beery AK, Lacey EA, Francis DD. Oxytocin and vasopressin receptor distributions in a solitary and a social species of tuco-tuco (Ctenomys haigi and Ctenomys sociabilis). J Comp Neurol. 2008 507: 1847-59.

Caporale N, Dan Y. Spike timing-dependent plasticity: a hebbian learning rule. Annu Rev Neurosci. 2008 31: 25-46.

Ivry RB, Schlerf JE. Dedicated and intrinsic models of time perception. Trends in Cognitive Sciences, in press 2008.

Kim H, Bao S. Distributed representation of perceptual categories in the auditory cortex. J Comput Neurosci. 2008; 24: 277-290.

Karns CM, Knight RT. Intermodal Auditory, Visual, and Tactile Attention Modulates Early Stages of Neural Processing. J Cogn Neurosci. 2008 Jun 19.

Miller BT, Verstynen T, Johnson MK, D‘Esposito M. Prefrontal and parietal contributions to refreshing: an rTMS study. Neuroimage. 2008 39: 436-40.

Mormino EC, Kluth JT, Madison CM, Rabinovici GD, Baker SL, Miller BL, Koeppe RA, Mathis CA, Weiner MW, Jagust WJ; Alzheimer’s Disease Neuroimaging Initiative. Episodic memory loss is related to hippocampal-mediated beta-amyloid deposition in elderly subjects. Brain. 2009 132: 1310-23.

Pan CL, Garriga G. Fresh air is good for nerves: hypoxia disturbs axon guidance. Nat Neurosci. 2008 11: 859-61.

Pan CL, Baum PD, Gu M, Jorgensen EM, Clark SG, Garriga G. C. elegans AP-2 and retromer control Wnt signaling by regulating mig-14/Wntless. Dev Cell. 2008 14: 132-9.

Published in 2007

Allen EA, Pasley BN, Duong T, Freeman RD. Transcranial magnetic stimulation elicits coupled neural and hemodynamic consequences. Science. 2007 317: 1918-21.

Amin N, Doupe A, Theunissen FE. Development of selectivity for natural sounds in the songbird auditory forebrain. J Neurophysiol. 2007 97: 3517-31.

Cadieu C, Kouh M, Pasupathy A, Connor CE, Riesenhuber M, Poggio T. A model of V4 shape selectivity and invariance. J Neurophysiol. 2007 98: 1733-50.

Canolty, RT, Soltani, M, Dalal, SS, Edwards, E, Dronkers, NF, Nagarajan, SS, Kirsch, HE, Barbaro, NM, Knight, RT. Spatiotemporal dynamics of word processing in the human brain. Frontiers in Neuroscience 2007 1: 185-196.

Chen L, Tracy T, Nam CI. Dynamics of postsynaptic glutamate receptor targeting. Curr Opin Neurobiol. 2007 17: 53-8.

Cools R, Sheridan M, Jacobs E, D‘Esposito M. Impulsive personality predicts dopamine-dependent changes in frontostriatal activity during component processes of working memory. J Neurosci 2007; 27:5506-5514.

Han YK, Köver H, Insanally MN, Semerdjian JH, Bao S. Early experience impairs perceptual discrimination. Nat Neurosci. 2007 10: 1191-7.

Khan, R. M., Luk, C. H., Flinker, A., Aggarwal, A., Lapid, H., Haddad, R., Sobel, N. (2007) . Predicting odor pleasantness from odorant structure: pleasantness as a reflection of the physical world. J Neurosci 27: 10015-10023.

Pasley BN, Inglis BA, Freeman RD. Analysis of oxygen metabolism implies a neural origin for the negative BOLD response in human visual cortex. Neuroimage. 2007 36: 269-76.

Pathak MM, Yarov-Yarovoy V, Agarwal G, Roux B, Barth P, Kohout S, Tombola F, Isacoff EY. Closing in on the resting state of the
Shaker K(+) channel. Neuron. 2007 56: 124-40.

Yao H, Shi L, Han F, Gao H & Dan Y, Rapid Learning in Visual Cortical Coding of Natural Scenes. Nature Neuroscience 2007 10: 772-778.

Published in 2006

Allen EA, Freeman RD. Dynamic spatial processing originates in early visual pathways. J Neurosci. 2006 26: 11763-74.

Canolty, RT, Edwards, E, Dalal, SS, Soltani, M, Nagarajan, SS, Kirsch, HE, Berger, MS, Barbaro, NM, Knight, RT. High gamma power is phase-locked to theta oscillations in human neocortex. Science 2006 313 (5793) : 1626-1628.

Gilbert AL, Regier T, Kay P, Ivry RB. Whorf hypothesis is supported in the right visual field but not the left. Proc Natl Acad Sci U S A. 2006 103: 489-94.

Münch TA, Werblin FS. Symmetric interactions within a homogeneous starburst cell network can lead to robust asymmetries in dendrites of starburst amacrine cells. J Neurophysiol. 2006 96: 471-7.

Pan CL, Howell JE, Clark SG, Hilliard M, Cordes S, Bargmann CI, Garriga G. Multiple Wnts and frizzled receptors regulate anteriorly directed cell and growth cone migrations in Caenorhabditis elegans. Dev Cell. 2006 10: 367-77.

Published in 2005

Fried SI, Münch TA, Werblin FS. Directional selectivity is formed at multiple levels by laterally offset inhibition in the rabbit retina. Neuron. 2005 46: 117-27.

Guerrero G, Reiff DF, Agarwal G, Ball RW, Borst A, Goodman CS, Isacoff EY. Heterogeneity in synaptic transmission along a Drosophila larval motor axon. Nat Neurosci. 2005 8: 1188-96.

Mainland JD, Johnson BN, Khan R, Ivry RB, Sobel N. Olfactory impairments in patients with unilateral cerebellar lesions are selective to inputs from the contralesional nostril. J Neurosci. 2005 25: 6362-71.

Miller BT, D‘Esposito M. Searching for “the top” in top-down control. Neuron. 2005 48: 535-8.

Zelano C, Bensafi M, Porter J, Mainland J, Johnson B, Bremner E, Telles C, Khan R, Sobel N. Attentional modulation in human primary olfactory cortex . Nat Neurosci. 2005 8: 114-20.